PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022923069.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 260aa    MW: 30188.3 Da    PI: 7.9636
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022923069.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-194295456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++f++eq++ Le+ F++ +++++ +++ +LA++lgL+ rq+ +WFqNrRa++k
  XP_022923069.1 42 KRRFSDEQIRSLESIFYSsDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWK 95
                    578**************98**********************************9 PP
2HD-ZIP_I/II1149.4e-3741133293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE+ F +++ kL++++Kv+la+eLglqprq+a+WFqnrRAR+k+k++E+++++L+++yd+l+++ ++L++e+++L ++l++
  XP_022923069.1  41 NKRRFSDEQIRSLESIFYSSDsKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQK 133
                     69***************88777********************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEREEYFILP NFETAAVASS QTCSTPRRRR RRRKKKTNNM NKRRFSDEQI RSLESIFYSS  60
DSKLDSRKKV QLATELGLQP RQIAIWFQNR RARWKSKEME NNFRSLRANY DNLASQFKTL  120
QEEKNSLLSQ LQKLSELVHE GPREGHYSNE IAETIYETKE KPQSFHDELG QNGVTYLNNN  180
YNTDKRGTEN GEGDRGLEMT HSSEGRSNDR SHAVEKACQL LNPNGSFESS ENWCGFDSDG  240
GGIIFEYQPC SSLQELSFWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RRRRRR
22733RRRRRRR
32735RRRRRRRKK
42744RRRRRRRKKKTNNMNKRR
52833RRRRRR
62834RRRRRRR
72836RRRRRRRKK
82845RRRRRRRKKKTNNMNKRR
92935RRRRRRR
102946RRRRRRRKKKTNNMNKRR
113036RRRRRRR
123047RRRRRRRKKKTNNMNKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-31HD-ZIP family protein