PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923362.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GATA

Protein Properties

Length: 539aa MW: 59934.7 Da PI: 6.3994

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923362.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_022923362.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RADPDECEDK 60 RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKTVDEDTS YRSSSGSAIS 120 NSESCQQFGS ADASDLTGPS QSTAWETIVP SRKRTCVGHS KSTAVEKLTQ DLYTILREQQ 180 SYFSGSSEED LLFDSETPMV SVEIGHGSVL MRHPSSIARE EESEASSISV DNKQFTINEV 240 YSEPSILPVH YEADNKTVNF STLGIGRKHS NGQGFLQEQI KRDRPQSEKT QALGNRNSPL 300 CNIDLTDILN FREFTKQLTS EDQQELMKYL PSVDTEELPE SLNSMFESPE FKENLNSFKQ 360 LLTEGVFDFS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKKCSSGVA VQGFAAASSG 420 FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTSVESKELV DSDGSCFSPR SLFALPSDGG 480 SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLVHH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RADPDECEDK  60
RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKTVDEDTS YRSSSGSAIS  120
NSESCQQFGS ADASDLTGPS QSTAWETIVP SRKRTCVGHS KSTAVEKLTQ DLYTILREQQ  180
SYFSGSSEED LLFDSETPMV SVEIGHGSVL MRHPSSIARE EESEASSISV DNKQFTINEV  240
YSEPSILPVH YEADNKTVNF STLGIGRKHS NGQGFLQEQI KRDRPQSEKT QALGNRNSPL  300
CNIDLTDILN FREFTKQLTS EDQQELMKYL PSVDTEELPE SLNSMFESPE FKENLNSFKQ  360
LLTEGVFDFS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKKCSSGVA VQGFAAASSG  420
FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTSVESKELV DSDGSCFSPR SLFALPSDGG  480
SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLVHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-146	GATA family protein