PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923548.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 30922.7 Da PI: 7.8328

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923548.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	115	169	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_022923548.1 115 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 169 78889************************************************98 PP
2	HD-ZIP_I/II	130.2	8.4e-42	115	204	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LE+sF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l XP_022923548.1 115 RKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELR-AL 204 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MMAGNDDGLG LSLGLSFDSH PHRHLQLNLM PSWTNDASSD RTSETGRSLL RGIDVNRIPP 60 STADCEEEAA MSSPNSTVSS VSGKRSERET NGEDLDGDRD CFRGISDEED GETSRKKLRL 120 TKDQSAVLED SFKEHNTLNP KQKLALAKQL GLRPRQVEVW FQNRRARTKL KQTEVDCEFL 180 KRCCENLTDE NRRLQKEVQE LRALKLSPQF YMHMTPPTTL TMCPSCERVA VPPSTSAPTT 240 VTRVGQAQAH HARPIHINPW ASAIPARPFN ALHPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	120	SRKKLRL
2	164	172	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	7e-85	HD-ZIP family protein