PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923613.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 520aa MW: 57624.1 Da PI: 7.6139

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923613.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.9	1.1e-41	147	223	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dl++ keyh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q XP_022923613.1 147 CQVYGCNKDLTSSKEYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQV 223 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MESWNYGSQG KGFVSDEMNS STNSPLRSKY SLLGWEFKNP CSFVENQSFG ELEFPQMLGK 60 QLADESVSHV LNTKIEEEST SKLSGSIVDS NNRDSSLIDL KLGRFIDQGD AHSSKYSKRA 120 AISSSTESST SQKRMRSQGV NFQAAFCQVY GCNKDLTSSK EYHKRHKVCE VHSKTAKVIV 180 NGIEQRFCQQ CSRFHLLVEF DDGKRSCRKR LAGHNERRRK PQVSFHSGRA QRLLQPYNGI 240 GDSRFQEKTP TATSFICKDI LSSGLYYPEK LGDNDWCKRV LVEAKNDYNS ISATSLSNRH 300 LNVKSPLLPY DFEVQIPPFQ EHGTSTAPSV NNMLCDTTCH YSHNVGGPHI DTTHPLFHHT 360 TLSSEDFGVY DAASTIQGLS GIPDSGCALS LLSSQSQTAS NHSSIVHIPR AYVMSESPSN 420 YSMSELSEKL MGVSSQASST GISSKFASGM SEAQMGPILT CDRSDRTVAF QIPDGVLHRS 480 GLANSKANLS YEHTPTIDLL QLSSQLHRVE HQRHSMQDSA

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MESWNYGSQG KGFVSDEMNS STNSPLRSKY SLLGWEFKNP CSFVENQSFG ELEFPQMLGK  60
QLADESVSHV LNTKIEEEST SKLSGSIVDS NNRDSSLIDL KLGRFIDQGD AHSSKYSKRA  120
AISSSTESST SQKRMRSQGV NFQAAFCQVY GCNKDLTSSK EYHKRHKVCE VHSKTAKVIV  180
NGIEQRFCQQ CSRFHLLVEF DDGKRSCRKR LAGHNERRRK PQVSFHSGRA QRLLQPYNGI  240
GDSRFQEKTP TATSFICKDI LSSGLYYPEK LGDNDWCKRV LVEAKNDYNS ISATSLSNRH  300
LNVKSPLLPY DFEVQIPPFQ EHGTSTAPSV NNMLCDTTCH YSHNVGGPHI DTTHPLFHHT  360
TLSSEDFGVY DAASTIQGLS GIPDSGCALS LLSSQSQTAS NHSSIVHIPR AYVMSESPSN  420
YSMSELSEKL MGVSSQASST GISSKFASGM SEAQMGPILT CDRSDRTVAF QIPDGVLHRS  480
GLANSKANLS YEHTPTIDLL QLSSQLHRVE HQRHSMQDSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-50	SBP family protein