PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923620.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28676.7 Da PI: 9.5328

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923620.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93	1.4e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+n qvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_022923620.1 9 KRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	109	5.3e-36	80	174	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++ + +++ e+akLk++ie Lq+++Rh++GedLesLslkeLq++eqqL+++lk++R++Kn+l++e+i++lqkk k+lq++n++L kk+ e XP_022923620.1 80 LIANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRTRKNQLMHESISDLQKKDKALQDQNNMLAKKIRE 174 5557788899**********************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVQLKR IENKINMQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMEKILERY ERYSYAERRL IANDSQSNGN WTLEYAKLKA RIEVLQKNHR HFMGEDLESL 120 SLKELQNIEQ QLDSALKHVR TRKNQLMHES ISDLQKKDKA LQDQNNMLAK KIREKEKAQA 180 QNPQMEQHHQ QHSHAIEPSP LLLPQPFLSL NMPCPYPTHA TGHEESAANH DRSGTLLPPW 240 MLGHHLGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	3e-92	MIKC_MADS family protein