PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923870.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 574aa MW: 63648.3 Da PI: 8.4716

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923870.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.1e-11	265	324	2	55
HHHHHHHHHHHHHHHHH..........HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNs..........afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN+ +f++LrellP + ++K +Ka+ L +++eYI+ Lq XP_022923870.1 265 RSKHSATEQRRRSKINDrqdftdiltcRFQKLRELLPCS----DQKRDKASFLLEVIEYIQFLQ 324 889************55555555555******9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC 60 AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP 120 VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRE PPAKMEQWAV 180 STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK EFVIKKESSP 240 STAYRGDLRI NVGGKCSGQK ANTPRSKHSA TEQRRRSKIN DRQDFTDILT CRFQKLRELL 300 PCSDQKRDKA SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARCYID 360 QSQVAKSGPV FIFAGCDQKN MSHFPAFLPR CSHNPVESNT STTFGEADHH HLGSTNKATS 420 YPMLGPRRFI PVTSEGEKTK IYSQVAHNAD KKPYEMQQLL CETRACTTDI AAVDNKLKEP 480 EQSIEGGRIS ISSAYSQELL KILTQALQSS GVDMSQASIA VQIELGKRTN CRDTAANPAI 540 VDDSARPSER AVVGTRVAAA EEDMEQAFRK KQNT

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC  60
AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP  120
VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRE PPAKMEQWAV  180
STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK EFVIKKESSP  240
STAYRGDLRI NVGGKCSGQK ANTPRSKHSA TEQRRRSKIN DRQDFTDILT CRFQKLRELL  300
PCSDQKRDKA SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARCYID  360
QSQVAKSGPV FIFAGCDQKN MSHFPAFLPR CSHNPVESNT STTFGEADHH HLGSTNKATS  420
YPMLGPRRFI PVTSEGEKTK IYSQVAHNAD KKPYEMQQLL CETRACTTDI AAVDNKLKEP  480
EQSIEGGRIS ISSAYSQELL KILTQALQSS GVDMSQASIA VQIELGKRTN CRDTAANPAI  540
VDDSARPSER AVVGTRVAAA EEDMEQAFRK KQNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-81	bHLH family protein