PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923871.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 565aa MW: 62526.1 Da PI: 8.6193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923871.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.6	4.7e-18	266	315	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++LrellP + ++K +Ka+ L +++eYI+ Lq XP_022923871.1 266 RSKHSATEQRRRSKINDRFQKLRELLPCS----DQKRDKASFLLEVIEYIQFLQ 315 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC 60 AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP 120 VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRA EPPAKMEQWA 180 VSTERPIQSS CSSFSSLSSS QPSGQQKRSF GEMLKSAANV SSKEEELDDG KEFVIKKESS 240 PSTAYRGDLR INVGGKCSGQ KANTPRSKHS ATEQRRRSKI NDRFQKLREL LPCSDQKRDK 300 ASFLLEVIEY IQFLQEKVRK YESSPPQGWY DEPAKLLPCR NNCNPARCYI DQSQVAKSGP 360 VFIFAGCDQK NMSHFPAFLP RCSHNPVESN TSTTFGEADH HHLGSTNKAT SYPMLGPRRF 420 IPVTSEGEKT KIYSQVAHNA DKKPYEMQQL LCETRACTTD IAAVDNKLKE PEQSIEGGRI 480 SISSAYSQEL LKILTQALQS SGVDMSQASI AVQIELGKRT NCRDTAANPA IVDDSARPSE 540 RAVVGTRVAA AEEDMEQAFR KKQNT

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC  60
AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP  120
VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRA EPPAKMEQWA  180
VSTERPIQSS CSSFSSLSSS QPSGQQKRSF GEMLKSAANV SSKEEELDDG KEFVIKKESS  240
PSTAYRGDLR INVGGKCSGQ KANTPRSKHS ATEQRRRSKI NDRFQKLREL LPCSDQKRDK  300
ASFLLEVIEY IQFLQEKVRK YESSPPQGWY DEPAKLLPCR NNCNPARCYI DQSQVAKSGP  360
VFIFAGCDQK NMSHFPAFLP RCSHNPVESN TSTTFGEADH HHLGSTNKAT SYPMLGPRRF  420
IPVTSEGEKT KIYSQVAHNA DKKPYEMQQL LCETRACTTD IAAVDNKLKE PEQSIEGGRI  480
SISSAYSQEL LKILTQALQS SGVDMSQASI AVQIELGKRT NCRDTAANPA IVDDSARPSE  540
RAVVGTRVAA AEEDMEQAFR KKQNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	3e-87	bHLH family protein