PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924026.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 343aa MW: 38758.2 Da PI: 6.5051

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924026.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl XP_022924026.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.4	3.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_022924026.1 67 RGMFSQQEQDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEQDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG 120 IDPNTHKPIV NIHEIKEKKI FEDKEFAEIP PVEGLGSGIS AVNNQGPAFL LGGVDYYDGG 180 VTAAPIRDHF MNKQPLDSLC YFEFQTGFDP YNLTDTNSNF GFSSMPSLTN SDHGSLSGTE 240 FSDNSGSNMS NYGEFYMNNN SNNNGVDNTT FCSWESDNKL DILFQNHVNN KTNNNHNHNN 300 NGIKSEELNP SSSVLDGQLI QSYPLTSLSQ DIVRCNFDAF YHL

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEQDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS SLKKKLMKQG  120
IDPNTHKPIV NIHEIKEKKI FEDKEFAEIP PVEGLGSGIS AVNNQGPAFL LGGVDYYDGG  180
VTAAPIRDHF MNKQPLDSLC YFEFQTGFDP YNLTDTNSNF GFSSMPSLTN SDHGSLSGTE  240
FSDNSGSNMS NYGEFYMNNN SNNNGVDNTT FCSWESDNKL DILFQNHVNN KTNNNHNHNN  300
NGIKSEELNP SSSVLDGQLI QSYPLTSLSQ DIVRCNFDAF YHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	3e-80	MYB family protein