PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924298.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 381aa MW: 42623.5 Da PI: 5.0069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924298.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	182	233	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_022924298.1 182 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 233 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MEKDDNYSNE APMPPSFSSH HHHQHDLYNN QDQFMRSRPF ETSADNATGI LTYFPANPLP 60 PPPLQSVTSP DKLSFAEVMQ FADFGPKLSL NRFDEDDEPA GIDPVYFLKF PVLNNERAEE 120 AAAGEEEAAE MGGRIVGELE EEENFRNDKN GNNNNNNNNN NGNSNKRKRG RTVKTSEEVE 180 SQRMTHIAVE RNRRKQMNEH LRVLRSLMPG SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE 240 SQKRRRLLGE PPLQAGDTPP PQQPPFLPPG AGNFGGHQNE GQILETTAES KSCLADVEVK 300 VLGFDAMIKI LSRRRPGQLI KAIAALEDLQ LNILHTNITT IEQTVLYSFN VKIASESRFT 360 AEDIASSVQQ IFGFIHANTG M

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MEKDDNYSNE APMPPSFSSH HHHQHDLYNN QDQFMRSRPF ETSADNATGI LTYFPANPLP  60
PPPLQSVTSP DKLSFAEVMQ FADFGPKLSL NRFDEDDEPA GIDPVYFLKF PVLNNERAEE  120
AAAGEEEAAE MGGRIVGELE EEENFRNDKN GNNNNNNNNN NGNSNKRKRG RTVKTSEEVE  180
SQRMTHIAVE RNRRKQMNEH LRVLRSLMPG SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE  240
SQKRRRLLGE PPLQAGDTPP PQQPPFLPPG AGNFGGHQNE GQILETTAES KSCLADVEVK  300
VLGFDAMIKI LSRRRPGQLI KAIAALEDLQ LNILHTNITT IEQTVLYSFN VKIASESRFT  360
AEDIASSVQQ IFGFIHANTG M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	194	RMTHIAVERNRR
2	243	247	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-113	bHLH family protein