PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924306.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 386aa MW: 43060.1 Da PI: 7.364

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924306.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	9.8e-41	146	223	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_022924306.1 146 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVVGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSH 223 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MEMEICANLM GHSNPTRDQT PNATNLSCPN NIWDFNSSRF DLDWATANSL CPDTTRSQPM 60 SAHALWLHPH DADARHHQFL YAADHQRAHF HPDPHLMCLK LGKRHYFEDA TAPSVVGGFA 120 TVGKRGKGLY GGDGGPYGPV PTTVPRCQVE GCHVALVNAK DYHRRHRVCE MHSKAPKVVV 180 VGLEQRFCQQ CSRFHVISEF DDSKRSCRRR LAGHNERRRK SSHESVAARN CTQENKSMTG 240 SIAYIPSPTG RALSLLSSKK ETWATSSELS LRSSAALREL IAENRAAILA RQLILDRDWH 300 LNHAAATDDF GGGGVGFHQQ QGLYCEQQQQ SWEGMNENGG AHVTLDLMQA PSTAFGMLSV 360 RGKSKEEDEE CCELWNSFHD HDSHVV

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MEMEICANLM GHSNPTRDQT PNATNLSCPN NIWDFNSSRF DLDWATANSL CPDTTRSQPM  60
SAHALWLHPH DADARHHQFL YAADHQRAHF HPDPHLMCLK LGKRHYFEDA TAPSVVGGFA  120
TVGKRGKGLY GGDGGPYGPV PTTVPRCQVE GCHVALVNAK DYHRRHRVCE MHSKAPKVVV  180
VGLEQRFCQQ CSRFHVISEF DDSKRSCRRR LAGHNERRRK SSHESVAARN CTQENKSMTG  240
SIAYIPSPTG RALSLLSSKK ETWATSSELS LRSSAALREL IAENRAAILA RQLILDRDWH  300
LNHAAATDDF GGGGVGFHQQ QGLYCEQQQQ SWEGMNENGG AHVTLDLMQA PSTAFGMLSV  360
RGKSKEEDEE CCELWNSFHD HDSHVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-36	SBP family protein