PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022924343.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 232aa    MW: 24973.6 Da    PI: 8.3308
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022924343.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.5e-3925124199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l++el
  XP_022924343.1  25 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEL 119
                     7***********************9988******************************************************************* PP

          DUF260  95 allke 99 
                     ++l++
  XP_022924343.1 120 SYLQA 124
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MSSRHGGGGC KEGNGGSSSN GSGGPCGACK FLRRKCTPEC IFAPYFDSEQ GTTHFAAVHK  60
VFGASNVSKL LLHIPEHKRL DAAITICYEA QARVREPVFG CVAHIFALQQ QAARLQVELS  120
YLQAYLAASE LSRTAPHPQA QPQDLVKPTI PSIVNLPLDC PSLPSAASDL SLLLDPVEQA  180
SPAKLQSPLE FCQIRSNNFP SMGSIDQQIV QKQLSTMQRI GASLFPYVPK RA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-58LBD family protein