PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924445.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 615aa MW: 68036.5 Da PI: 6.2218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924445.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5.1e-13	443	489	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq XP_022924445.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 489 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMSCSVSNE NLFMAVRNEA NLQNKLSDLV 60 ERPNASNFSW NYAIFWQLSH SNSGDWVLGW GDGLCRDPRE GEETEATQIL SLRLEDESQQ 120 RMKKTALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPSGEGG PGKCLASRKH 180 IWLLDVLNSP SEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVQLVRSLF 240 SSQPSLDRVR SSATMSMMAE RKDENAPFVS LGIAERGGGN PKVFGQTLNS GNLGRSHFRE 300 KLAIRKMDDR SWEACANGGR IQFQSPRNGL RSPSLAHVHG LKQGNTTEVY GSPTPPANNN 360 HEQLVNGVRD EYCLNPYQSQ KLAQMQIDFS GATSRPSVIN RVGVDSEHSD VEPQCKEEGP 420 GTDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD 480 AIAYINELQT KVKAMEVERE KSGVTSSEAT PSEVNPEIEK KDQFLDVDID IEAGHDEVIV 540 KVSCPLESHP ASRVIKAMKE AQINVVDSKL CEANDTVVHT FVIKSPGSEQ LTKEQLIAAF 600 SRDSTPLHPP LSTVG

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MKIEDGLRSV GGKDEDKTVV AAVLGTRAFN YLMSCSVSNE NLFMAVRNEA NLQNKLSDLV  60
ERPNASNFSW NYAIFWQLSH SNSGDWVLGW GDGLCRDPRE GEETEATQIL SLRLEDESQQ  120
RMKKTALQKL HTLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPSGEGG PGKCLASRKH  180
IWLLDVLNSP SEYCVRSYLA KSAGIRTVVL VPTDVGVVEL GSVRSVSESL ELVQLVRSLF  240
SSQPSLDRVR SSATMSMMAE RKDENAPFVS LGIAERGGGN PKVFGQTLNS GNLGRSHFRE  300
KLAIRKMDDR SWEACANGGR IQFQSPRNGL RSPSLAHVHG LKQGNTTEVY GSPTPPANNN  360
HEQLVNGVRD EYCLNPYQSQ KLAQMQIDFS GATSRPSVIN RVGVDSEHSD VEPQCKEEGP  420
GTDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AIAYINELQT KVKAMEVERE KSGVTSSEAT PSEVNPEIEK KDQFLDVDID IEAGHDEVIV  540
KVSCPLESHP ASRVIKAMKE AQINVVDSKL CEANDTVVHT FVIKSPGSEQ LTKEQLIAAF  600
SRDSTPLHPP LSTVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	433	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein