PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022925262.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 294aa    MW: 31061.3 Da    PI: 9.5836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022925262.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-073458226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k ++C  f+ t  C++G++C+F H 
  XP_022925262.1 34 KSKPCTKFFSTAGCPFGESCHFLHH 58
                    7789********************6 PP
2zf-CCCH27.55.3e-09101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  XP_022925262.1 101 KTRMCNKYNTAEGCKFGDKCNFAHGE 126
                     89**********************96 PP
3zf-CCCH35.22.1e-11261285126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C++fa+ G C +G+rC+FaHg
  XP_022925262.1 261 YKTKMCDNFAK-GSCTFGERCHFAHG 285
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MDMRKRRPES AFNSNGTFKK HKQELEPLST VGSKSKPCTK FFSTAGCPFG ESCHFLHHVP  60
GGYNVVAQMM NLPPVGSQPS RNMAAPPSVT NGGSSAPSQV KTRMCNKYNT AEGCKFGDKC  120
NFAHGEWELG RPPSHDNPRA MGGHMVGRMG GRMDLPQPGP AASFGASATA KISIDASLAG  180
AIIGKGGINS KQICRQTGAK LSIRDHESDT NLRNIELEGT FEQINEASAM VRELIITVSM  240
AGPGKAPGAM GGGPAPSGSN YKTKMCDNFA KGSCTFGERC HFAHGAAELR KSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-57C3H family protein