PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022925622.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

RAV

Protein Properties

Length: 360aa MW: 41759.8 Da PI: 6.877

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022925622.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.8	8.3e-11	52	99	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV ++grW A+I+ + +r++lg+f ++++Aa a++ a+ kl+ XP_022925622.1 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKSEKDAAMAYDSAAIKLRT 99 789996.6679****999......44******99**********996 PP
2	B3	94.9	5.6e-30	176	266	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pkk+a +h +++ +++++++d+s ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ XP_022925622.1 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENSDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 266 99**************************98844556889**********************************************93 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEDEASSTFI SFTKSPLLID EVSDSNFSDY ALPDAKRMRL DHDLNDVATV DKFKGVVPQQ 60 NGRWGAQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRTR DSHRNFPWTR LSIEEPNFQS 120 KFSIDAILSM IKDGSYSSKF SAYLRTKSQI SDSNIQNLQT IENGDRDGHF SCSHLFQKEL 180 TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENSDDIEIVF YDTSMKTWKF RYCYWRSSQS 240 FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDKNGGTLI FIDVIYKKPE DDRSESSCLA 300 AERESIKNEQ LQRDLGLDRE DCEGKKKKEE EEEILNREKL NPISQNVGQK RIRLFGVHID

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEDEASSTFI SFTKSPLLID EVSDSNFSDY ALPDAKRMRL DHDLNDVATV DKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KSEKDAAMAY DSAAIKLRTR DSHRNFPWTR LSIEEPNFQS  120
KFSIDAILSM IKDGSYSSKF SAYLRTKSQI SDSNIQNLQT IENGDRDGHF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENSDDIEIVF YDTSMKTWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GRDKNGGTLI FIDVIYKKPE DDRSESSCLA  300
AERESIKNEQ LQRDLGLDRE DCEGKKKKEE EEEILNREKL NPISQNVGQK RIRLFGVHID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-101	RAV family protein