PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022925664.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LSD

Protein Properties

Length: 400aa MW: 42963.3 Da PI: 9.1196

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022925664.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.7	2.9e-11	236	260	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC tV XP_022925664.1 236 CSGCRSILLYPGGATNVCCALCSTV 260 ***********************99 PP
2	zf-LSD1	45.5	1.2e-14	275	299	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+tV XP_022925664.1 275 CGGCRTLLMYARGATSVRCSCCHTV 299 ************************9 PP
3	zf-LSD1	40.1	5.8e-13	313	337	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_022925664.1 313 CGNCRTTLVFPYGAPSVKCAICHYV 337 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MNMNIFRKKT SPKDALRTSK REMAVATRGI EREIASLQLE EKKLVAEIKQ TAKTGNEAAT 60 RILARQLVRL RQQITNLQGS RAQIRGVATH TQALYASTSI STGMKGATKA MVAMNKQMAP 120 AKQAKVIKEF QKQSAQLDTT IEMMSESIDE TLDKDEAEEE TEELTNQVLD EIGVDIASQL 180 SSAPKGRIAA RKTENTVTSS ESPDVEDLEK RLASLRQSVV AGRIGRKAAM QSQLVCSGCR 240 SILLYPGGAT NVCCALCSTV TSVPPPGTDM AQLICGGCRT LLMYARGATS VRCSCCHTVN 300 LAPATNQVAH VNCGNCRTTL VFPYGAPSVK CAICHYVTNV GMSNVRVPIP VHRRNGTLSS 360 GMPPSSSSQS QTVVVENPMS VDESGKLVSN VVVGVTTDKR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MNMNIFRKKT SPKDALRTSK REMAVATRGI EREIASLQLE EKKLVAEIKQ TAKTGNEAAT  60
RILARQLVRL RQQITNLQGS RAQIRGVATH TQALYASTSI STGMKGATKA MVAMNKQMAP  120
AKQAKVIKEF QKQSAQLDTT IEMMSESIDE TLDKDEAEEE TEELTNQVLD EIGVDIASQL  180
SSAPKGRIAA RKTENTVTSS ESPDVEDLEK RLASLRQSVV AGRIGRKAAM QSQLVCSGCR  240
SILLYPGGAT NVCCALCSTV TSVPPPGTDM AQLICGGCRT LLMYARGATS VRCSCCHTVN  300
LAPATNQVAH VNCGNCRTTL VFPYGAPSVK CAICHYVTNV GMSNVRVPIP VHRRNGTLSS  360
GMPPSSSSQS QTVVVENPMS VDESGKLVSN VVVGVTTDKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	3e-72	LSD family protein