PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022925702.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26329.8 Da    PI: 10.1011
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022925702.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.4e-311766150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_022925702.1 17 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 66
                    79***********************************************8 PP
2K-box115.54.8e-38851814100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sLs+k+L++Le++Lek++++iRskKnell+++ie+++k+e +l+++n+ Lr+k+
  XP_022925702.1  85 SNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKI 179
                     3444499***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_022925702.1 180 AE 181
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSDSPQRKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG  60
RLYEYANNSV KATIDRYKKA SSDSSNTGST SEANTQFYQQ EAAKLRVQIG NLQNSNRNML  120
GESLSSLSVK DLKSLESKLE KGISRIRSKK NELLFAEIEY MRKREIDLHN NNQLLRAKIA  180
ESERNANMMG GEFELMQSHP YDPRDFFQVN GLQHNHQYPR QDNMALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-96MIKC_MADS family protein