PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926197.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 352aa MW: 41105.7 Da PI: 9.0906

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926197.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.1	4.3e-27	103	200	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li++ ++m+e++++g+ +kk++W++vsk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++e++++ + +d XP_022926197.1 103 KWTNKMVKLLITVLSYMGEDSGSGCgslgtrrlvvlQKKGKWKSVSKVMGERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCEAVENPAVLD 197 7********************999999999************************************************6699999999999 PP trihelix 84 qle 86 +++ XP_022926197.1 198 EID 200 886 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MKYLKASMIP GGVSYGGGDW QGSMGVPYQH PQYHDSSRYQ SPVRGSFPLT MGSLQQRDHW 60 IGLGDYDNRE RGNDMTSDED EEGIYVHNDA RNEKNGSQWQ RVKWTNKMVK LLITVLSYMG 120 EDSGSGCGSL GTRRLVVLQK KGKWKSVSKV MGERGYHVSP QQCEDKFNDL NKRYKRLNDM 180 LGRGTSCEAV ENPAVLDEID YLKAKEKDDV RKILNSKHLF YEEMCSYHNG NRLHLPHDPE 240 LLHSLQLVLG NRIDSSRVAR FVTNQVVAET DRICQLQQLR IESHCIELEE KRVRIEIGRL 300 ELENERMKWE RFKKKREREL EKLKLENERM RVENELIASQ LKKRRCSHLH RI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MKYLKASMIP GGVSYGGGDW QGSMGVPYQH PQYHDSSRYQ SPVRGSFPLT MGSLQQRDHW  60
IGLGDYDNRE RGNDMTSDED EEGIYVHNDA RNEKNGSQWQ RVKWTNKMVK LLITVLSYMG  120
EDSGSGCGSL GTRRLVVLQK KGKWKSVSKV MGERGYHVSP QQCEDKFNDL NKRYKRLNDM  180
LGRGTSCEAV ENPAVLDEID YLKAKEKDDV RKILNSKHLF YEEMCSYHNG NRLHLPHDPE  240
LLHSLQLVLG NRIDSSRVAR FVTNQVVAET DRICQLQQLR IESHCIELEE KRVRIEIGRL  300
ELENERMKWE RFKKKREREL EKLKLENERM RVENELIASQ LKKRRCSHLH RI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-93	Trihelix family protein