PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926606.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 871aa    MW: 97285.7 Da    PI: 6.6392
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926606.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022926606.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************86555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022926606.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp120.61.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_022926606.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    
MRLSAAGFSP QPPEGEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAISTNKE  60
VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSAQEQKEP YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRASR PQTMMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTG LPSFHGLKED DLGLNSQLMW LRGDALDRGI QPLNLHGIGV  420
APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPATF  480
MSPQMLQQPP QPPQTQPHQT FLQNDHEIQH LPHSQAKTQP TVLRQEMKQQ TFNNEQQQQQ  540
QQQQPQQQVF DHQQIPSSIS TMTQFGSVSQ SLQTIPSFCR QQSFSDSNGI HMTNPIISPL  600
HSLLGSFPQD ESSQLLNLPR THPMIHSSAW PSKRAAIDPL ISSGNSQFVY LQEENMGTAQ  660
ANISQNVSLP PFPGRECSLD QRNGDPQSNL LFGVNIEPSS LLMQNGMPNL RGICSDSDST  720
AIPFSSNYVN TAGTNFSANP AGTPSNCIED SGILPNFVKV YKSGTFGRSL DISKFSSYHQ  780
LRSELAHKFN LEGELEDPLR SGWQLVFVDR ENDILLLGDD PWQEFVNSVW CIKILSPQEV  840
QEMGRVDSYA DRQESSRNLS SGITSVGSLE Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein