PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926675.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 708aa    MW: 77131.5 Da    PI: 7.767
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926675.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24151252199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_022926675.1 151 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 242
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_022926675.1 243 GELRLGIRRA 252
                     999****996 PP
2Auxin_resp1064.3e-35277358182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL
  XP_022926675.1 277 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 358
                     689*****************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
PIEHKMQEEM TNDSEGEDFE GSEKTTTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL  180
DYSQQRPSQE LVAKDLLGIK WKFRHIYRGQ PRRHLLTTGW SAFVNKKRLV SGDAVLFLRG  240
NDGELRLGIR RAAQLKTGSA FSNICSQQLN SSSIMDVVNA ISSKTSFSVY YNPRATSSQF  300
VLPFHKFLKS INHSFSAGMR FSLSFETDDA ADRRCTGRIT GVGDVDPIRW PGSRWRSLVV  360
RWDNVETKRH GRVSPWEIEP SGSVSVASNM VPPGLKRTRI GLSPTELEFP APNGIGASDF  420
GESLRFQKVL QGQEILGYST PIDGDNNIRH PPEKRRSFPG LHGSGIAIMR NGPRIPVTNS  480
ETSSRGFMFD ESFQFHKVLQ GQEIYPSPFF GIATATNEVK ASGGYGPVDS VPLSRSKDGW  540
PITMQSENFL TRSSIPSVQV SSPSSVFMFQ QSMVPVQSFN SYNRGNFTEQ RTMNKSTSHN  600
SGTAFMTTSL GVQKQLALSH PSTTEPAFTG NKAGCRLFGF SLTEGKNVGN TDNASPATTP  660
INAGTASVLS SNSGLRCPLK SPLMSKVVGS NCTEGAVQYH FANCSTYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein