PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926676.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 704aa MW: 76551.9 Da PI: 7.9656

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926676.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	9.7e-24	152	253	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_022926676.1 152 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 243 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_022926676.1 244 GELRLGIRRA 253 999**996 PP
2	Auxin_resp	106	4.3e-35	278	359	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_022926676.1 278 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 359 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP 180 LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR 240 GNDGELRLGI RRAAQLKTGS AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ 300 FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV 360 VRWDNVETKR HGRVSPWEIE PSGSVSVASN MVPPGLKRTR IGLSPTELEF PAPNGIGASD 420 FGESLRFQKV LQGQEILGYS TPIDGDNNIR HPPEKRRSFP GLHGSGIAIM RNGPRIPVTN 480 SETSSRGFMF DESFQFHKVL QGQEIYPSPF FGIATATNEV KASGGYGPVD SVPLSRSKDG 540 WPITMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH 600 NSGTAFMTTS LGVQKQLALS HPSTTEPAFT GNKAGCRLFG FSLTEGKNVG NTDNASPATT 660 PINAGTASVL SSNSGLRCPL KSPLMSKVVG SNCTEVSNLS ARAV

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EPIEHKMQEE MTNDSEGEDF EGSEKTTTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP  180
LDYSQQRPSQ ELVAKDLLGI KWKFRHIYRG QPRRHLLTTG WSAFVNKKRL VSGDAVLFLR  240
GNDGELRLGI RRAAQLKTGS AFSNICSQQL NSSSIMDVVN AISSKTSFSV YYNPRATSSQ  300
FVLPFHKFLK SINHSFSAGM RFSLSFETDD AADRRCTGRI TGVGDVDPIR WPGSRWRSLV  360
VRWDNVETKR HGRVSPWEIE PSGSVSVASN MVPPGLKRTR IGLSPTELEF PAPNGIGASD  420
FGESLRFQKV LQGQEILGYS TPIDGDNNIR HPPEKRRSFP GLHGSGIAIM RNGPRIPVTN  480
SETSSRGFMF DESFQFHKVL QGQEIYPSPF FGIATATNEV KASGGYGPVD SVPLSRSKDG  540
WPITMQSENF LTRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NSYNRGNFTE QRTMNKSTSH  600
NSGTAFMTTS LGVQKQLALS HPSTTEPAFT GNKAGCRLFG FSLTEGKNVG NTDNASPATT  660
PINAGTASVL SSNSGLRCPL KSPLMSKVVG SNCTEVSNLS ARAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein