PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926677.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 703aa    MW: 76522.8 Da    PI: 7.9264
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926677.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_022926677.1 146 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 237
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_022926677.1 238 GELRLGIRRA 247
                     999****996 PP
2Auxin_resp1064.3e-35272353182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL
  XP_022926677.1 272 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 353
                     689*****************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HVRAEAGSDE VYAQVSLFPE  120
NEEEMTNDSE GEDFEGSEKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED CFPPLDYSQQ  180
RPSQELVAKD LLGIKWKFRH IYRGQPRRHL LTTGWSAFVN KKRLVSGDAV LFLRGNDGEL  240
RLGIRRAAQL KTGSAFSNIC SQQLNSSSIM DVVNAISSKT SFSVYYNPRA TSSQFVLPFH  300
KFLKSINHSF SAGMRFSLSF ETDDAADRRC TGRITGVGDV DPIRWPGSRW RSLVVRWDNV  360
ETKRHGRVSP WEIEPSGSVS VASNMVPPGL KRTRIGLSPT ELEFPAPNGI GASDFGESLR  420
FQKVLQGQEI LGYSTPIDGD NNIRHPPEKR RSFPGLHGSG IAIMRNGPRI PVTNSETSSR  480
GFMFDESFQF HKVLQGQEIY PSPFFGIATA TNEVKASGGY GPVDSVPLSR SKDGWPITMQ  540
SENFLTRSSI PSVQVSSPSS VFMFQQSMVP VQSFNSYNRG NFTEQRTMNK STSHNSGTAF  600
MTTSLGVQKQ LALSHPSTTE PAFTGNKAGC RLFGFSLTEG KNVGNTDNAS PATTPINAGT  660
ASVLSSNSGL RCPLKSPLMS KVVGSNCTEG AVQYHFANCS TYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein