PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022926678.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 702aa    MW: 76395.6 Da    PI: 7.7581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022926678.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.7e-24145246199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + ++
  XP_022926678.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 236
                     99****************************963.3445679************************************************..4489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_022926678.1 237 GELRLGIRRA 246
                     999****996 PP
2Auxin_resp1064.3e-35271352182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL
  XP_022926678.1 271 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 352
                     689*****************************************************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EEEMTNDSEG EDFEGSEKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR  180
PSQELVAKDL LGIKWKFRHI YRGQPRRHLL TTGWSAFVNK KRLVSGDAVL FLRGNDGELR  240
LGIRRAAQLK TGSAFSNICS QQLNSSSIMD VVNAISSKTS FSVYYNPRAT SSQFVLPFHK  300
FLKSINHSFS AGMRFSLSFE TDDAADRRCT GRITGVGDVD PIRWPGSRWR SLVVRWDNVE  360
TKRHGRVSPW EIEPSGSVSV ASNMVPPGLK RTRIGLSPTE LEFPAPNGIG ASDFGESLRF  420
QKVLQGQEIL GYSTPIDGDN NIRHPPEKRR SFPGLHGSGI AIMRNGPRIP VTNSETSSRG  480
FMFDESFQFH KVLQGQEIYP SPFFGIATAT NEVKASGGYG PVDSVPLSRS KDGWPITMQS  540
ENFLTRSSIP SVQVSSPSSV FMFQQSMVPV QSFNSYNRGN FTEQRTMNKS TSHNSGTAFM  600
TTSLGVQKQL ALSHPSTTEP AFTGNKAGCR LFGFSLTEGK NVGNTDNASP ATTPINAGTA  660
SVLSSNSGLR CPLKSPLMSK VVGSNCTEGA VQYHFANCST YY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein