PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022926679.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 701aa MW: 76267.4 Da PI: 7.7581

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022926679.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.9	9.7e-24	144	245	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_022926679.1 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 235 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_022926679.1 236 GELRLGIRRA 245 999**996 PP
2	Auxin_resp	106	4.3e-35	270	351	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_022926679.1 270 VVNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 351 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE 120 EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP 180 SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL 240 GIRRAAQLKT GSAFSNICSQ QLNSSSIMDV VNAISSKTSF SVYYNPRATS SQFVLPFHKF 300 LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDNVET 360 KRHGRVSPWE IEPSGSVSVA SNMVPPGLKR TRIGLSPTEL EFPAPNGIGA SDFGESLRFQ 420 KVLQGQEILG YSTPIDGDNN IRHPPEKRRS FPGLHGSGIA IMRNGPRIPV TNSETSSRGF 480 MFDESFQFHK VLQGQEIYPS PFFGIATATN EVKASGGYGP VDSVPLSRSK DGWPITMQSE 540 NFLTRSSIPS VQVSSPSSVF MFQQSMVPVQ SFNSYNRGNF TEQRTMNKST SHNSGTAFMT 600 TSLGVQKQLA LSHPSTTEPA FTGNKAGCRL FGFSLTEGKN VGNTDNASPA TTPINAGTAS 660 VLSSNSGLRC PLKSPLMSKV VGSNCTEGAV QYHFANCSTY Y

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPK  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP  180
SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL  240
GIRRAAQLKT GSAFSNICSQ QLNSSSIMDV VNAISSKTSF SVYYNPRATS SQFVLPFHKF  300
LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDNVET  360
KRHGRVSPWE IEPSGSVSVA SNMVPPGLKR TRIGLSPTEL EFPAPNGIGA SDFGESLRFQ  420
KVLQGQEILG YSTPIDGDNN IRHPPEKRRS FPGLHGSGIA IMRNGPRIPV TNSETSSRGF  480
MFDESFQFHK VLQGQEIYPS PFFGIATATN EVKASGGYGP VDSVPLSRSK DGWPITMQSE  540
NFLTRSSIPS VQVSSPSSVF MFQQSMVPVQ SFNSYNRGNF TEQRTMNKST SHNSGTAFMT  600
TSLGVQKQLA LSHPSTTEPA FTGNKAGCRL FGFSLTEGKN VGNTDNASPA TTPINAGTAS  660
VLSSNSGLRC PLKSPLMSKV VGSNCTEGAV QYHFANCSTY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein