PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022927412.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 314aa    MW: 35290.4 Da    PI: 6.5736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022927412.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
   XP_022927412.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.83.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
   XP_022927412.1  67 RGNFTHHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTYL 112
                      89********************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF THHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNHWNT YLKKKLNNNH  120
HHHHHPSPAT DLSATGGGDA RGQWERRLQT DIQMAKQALS DALSPETSKP PPPPPPPKPV  180
DLKTPHQQIP TYASSADNIA RWLKEWNKNS PGNNRRRSSS PPAMESGNFG GEDGGGIKEV  240
GLSESIESFL GFDSFESSNS DLSPETSVFQ GESETDESEE LLPMELLEKW LHEDSKDYYF  300
SDIIADEKLK CDLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.13e-89MYB family protein