PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022927465.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28456.2 Da PI: 9.9537

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022927465.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.7e-31	35	84	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_022927465.1 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 84 79***********************************************8 PP
2	K-box	106.1	4.3e-35	105	199	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ea+++ ++qe+akL+++i n+q+ +RhllGe+++sLs+k+L++L+ +Lek++++iRs+Kne+l+++ie++ k+e el+++n+ +r+k++e XP_022927465.1 105 AGSVSEANTQFYEQESAKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKREIELHNTNQLIRAKIAE 199 55699***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGYPDEMQKQ KQKQKQAGEE QSQPRRSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE 60 LSVLCDAEVA LIVFSTRGRL YEYANNSVRA TISRYKKACS DPLSAGSVSE ANTQFYEQES 120 AKLRAQIGNM QNLNRHLLGE SISSLSVKDL KSLQVKLEKG ISRIRSRKNE VLFAEIEYMH 180 KREIELHNTN QLIRAKIAEM ERREQNRSGN NSIGARGEGE GEGCVGPNLE GNEQYYFPHQ 240 NHHISLQLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	3e-94	MIKC_MADS family protein