PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928262.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 668aa MW: 75878.9 Da PI: 5.1724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928262.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	409	452	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022928262.1 409 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 452 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MKSLSLFTLS SIILHFPLHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD 60 QRCIEWVDCC CAGTENNQNG GEKHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGYFID 120 IYHSTYPTSL PHLSLNFSLL NRVYIQTLLS NEPRWLLFSN GMDSTALEET MGTRVLIPFP 180 FGLVELFIAK HASEDQHVID FVTTQCSISI EQGAIINSSN MDTSFSVDVN ATNEIQSKPF 240 LADQNVVIED PENQFEAPGS TAPTLENANV GYEISLDRIR LCSSPMNFLQ QFNYSSENRN 300 KNEIFHECSQ DAFHTDKQGN PYKFSAENEF QEVDIMQGSL MNNTSNIHMQ FKENTECKEQ 360 QGEEKDLVKN ENGRSDSVSD CSDQIDDEDD VVAKYRRRTG QGPQSKNLVA ERKRRKKLNE 420 RLYNLRALVP KISKMDKASI LGDAIDFVKE LQKQVKELQD ELEEHSDDEN GKIVVTGNDG 480 NKTSVQLPEF LSQNDKAQNS YHIGVLGSGS LLKQHHQDTE GTNNDKTQQM EPQVEVAQID 540 GNEFFVKVFC ENKRGGFMRL MEALNALGLE VTNANVTSYR GLVSNVFKVG KKDSELVQAD 600 DVRDSLLEIT KYPCRGWSEM VKQPECSVSR MDYQTHPHTH QHQHQHQHQI QHPFLDKAIN 660 SRLHLLDD

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MKSLSLFTLS SIILHFPLHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD  60
QRCIEWVDCC CAGTENNQNG GEKHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGYFID  120
IYHSTYPTSL PHLSLNFSLL NRVYIQTLLS NEPRWLLFSN GMDSTALEET MGTRVLIPFP  180
FGLVELFIAK HASEDQHVID FVTTQCSISI EQGAIINSSN MDTSFSVDVN ATNEIQSKPF  240
LADQNVVIED PENQFEAPGS TAPTLENANV GYEISLDRIR LCSSPMNFLQ QFNYSSENRN  300
KNEIFHECSQ DAFHTDKQGN PYKFSAENEF QEVDIMQGSL MNNTSNIHMQ FKENTECKEQ  360
QGEEKDLVKN ENGRSDSVSD CSDQIDDEDD VVAKYRRRTG QGPQSKNLVA ERKRRKKLNE  420
RLYNLRALVP KISKMDKASI LGDAIDFVKE LQKQVKELQD ELEEHSDDEN GKIVVTGNDG  480
NKTSVQLPEF LSQNDKAQNS YHIGVLGSGS LLKQHHQDTE GTNNDKTQQM EPQVEVAQID  540
GNEFFVKVFC ENKRGGFMRL MEALNALGLE VTNANVTSYR GLVSNVFKVG KKDSELVQAD  600
DVRDSLLEIT KYPCRGWSEM VKQPECSVSR MDYQTHPHTH QHQHQHQHQI QHPFLDKAIN  660
SRLHLLDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	396	417	RRRTGQGPQSKNLVAERKRRKK
2	411	418	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-121	bHLH family protein