PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928263.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 642aa MW: 72784.4 Da PI: 5.055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928263.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	383	426	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022928263.1 383 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 426 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MKSLSLFTLS SIILHFPLHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD 60 QRCIEWVDCC CAGTENNQNG GEKHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGVYIQ 120 TLLSNEPRWL LFSNGMDSTA LEETMGTRVL IPFPFGLVEL FIAKHASEDQ HVIDFVTTQC 180 SISIEQGAII NSSNMDTSFS VDVNATNEIQ SKPFLADQNV VIEDPENQFE APGSTAPTLE 240 NANVGYEISL DRIRLCSSPM NFLQQFNYSS ENRNKNEIFH ECSQDAFHTD KQGNPYKFSA 300 ENEFQEVDIM QGSLMNNTSN IHMQFKENTE CKEQQGEEKD LVKNENGRSD SVSDCSDQID 360 DEDDVVAKYR RRTGQGPQSK NLVAERKRRK KLNERLYNLR ALVPKISKMD KASILGDAID 420 FVKELQKQVK ELQDELEEHS DDENGKIVVT GNDGNKTSVQ LPEFLSQNDK AQNSYHIGVL 480 GSGSLLKQHH QDTEGTNNDK TQQMEPQVEV AQIDGNEFFV KVFCENKRGG FMRLMEALNA 540 LGLEVTNANV TSYRGLVSNV FKVGKKDSEL VQADDVRDSL LEITKYPCRG WSEMVKQPEC 600 SVSRMDYQTH PHTHQHQHQH QHQIQHPFLD KAINSRLHLL DD

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MKSLSLFTLS SIILHFPLHN SFFSDINHSI VIMQTLMERL RPLVGSKSWD YCVLWKLSQD  60
QRCIEWVDCC CAGTENNQNG GEKHVFPCRD TLSPHPRASS CDLLAQLPCS VPLNSGVYIQ  120
TLLSNEPRWL LFSNGMDSTA LEETMGTRVL IPFPFGLVEL FIAKHASEDQ HVIDFVTTQC  180
SISIEQGAII NSSNMDTSFS VDVNATNEIQ SKPFLADQNV VIEDPENQFE APGSTAPTLE  240
NANVGYEISL DRIRLCSSPM NFLQQFNYSS ENRNKNEIFH ECSQDAFHTD KQGNPYKFSA  300
ENEFQEVDIM QGSLMNNTSN IHMQFKENTE CKEQQGEEKD LVKNENGRSD SVSDCSDQID  360
DEDDVVAKYR RRTGQGPQSK NLVAERKRRK KLNERLYNLR ALVPKISKMD KASILGDAID  420
FVKELQKQVK ELQDELEEHS DDENGKIVVT GNDGNKTSVQ LPEFLSQNDK AQNSYHIGVL  480
GSGSLLKQHH QDTEGTNNDK TQQMEPQVEV AQIDGNEFFV KVFCENKRGG FMRLMEALNA  540
LGLEVTNANV TSYRGLVSNV FKVGKKDSEL VQADDVRDSL LEITKYPCRG WSEMVKQPEC  600
SVSRMDYQTH PHTHQHQHQH QHQIQHPFLD KAINSRLHLL DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	370	391	RRRTGQGPQSKNLVAERKRRKK
2	385	392	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-127	bHLH family protein