PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928265.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 636aa MW: 72237.6 Da PI: 5.0038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928265.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	377	420	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022928265.1 377 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 420 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MQTLMERLRP LVGSKSWDYC VLWKLSQDQR CIEWVDCCCA GTENNQNGGE KHVFPCRDTL 60 SPHPRASSCD LLAQLPCSVP LNSGYFIDIY HSTYPTSLPH LSLNFSLLNR VYIQTLLSNE 120 PRWLLFSNGM DSTALEETMG TRVLIPFPFG LVELFIAKHA SEDQHVIDFV TTQCSISIEQ 180 GAIINSSNMD TSFSVDVNAT NEIQSKPFLA DQNVVIEDPE NQFEAPGSTA PTLENANVGY 240 EISLDRIRLC SSPMNFLQQF NYSSENRNKN EIFHECSQDA FHTDKQGNPY KFSAENEFQE 300 VDIMQGSLMN NTSNIHMQFK ENTECKEQQG EEKDLVKNEN GRSDSVSDCS DQIDDEDDVV 360 AKYRRRTGQG PQSKNLVAER KRRKKLNERL YNLRALVPKI SKMDKASILG DAIDFVKELQ 420 KQVKELQDEL EEHSDDENGK IVVTGNDGNK TSVQLPEFLS QNDKAQNSYH IGVLGSGSLL 480 KQHHQDTEGT NNDKTQQMEP QVEVAQIDGN EFFVKVFCEN KRGGFMRLME ALNALGLEVT 540 NANVTSYRGL VSNVFKVGKK DSELVQADDV RDSLLEITKY PCRGWSEMVK QPECSVSRMD 600 YQTHPHTHQH QHQHQHQIQH PFLDKAINSR LHLLDD

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MQTLMERLRP LVGSKSWDYC VLWKLSQDQR CIEWVDCCCA GTENNQNGGE KHVFPCRDTL  60
SPHPRASSCD LLAQLPCSVP LNSGYFIDIY HSTYPTSLPH LSLNFSLLNR VYIQTLLSNE  120
PRWLLFSNGM DSTALEETMG TRVLIPFPFG LVELFIAKHA SEDQHVIDFV TTQCSISIEQ  180
GAIINSSNMD TSFSVDVNAT NEIQSKPFLA DQNVVIEDPE NQFEAPGSTA PTLENANVGY  240
EISLDRIRLC SSPMNFLQQF NYSSENRNKN EIFHECSQDA FHTDKQGNPY KFSAENEFQE  300
VDIMQGSLMN NTSNIHMQFK ENTECKEQQG EEKDLVKNEN GRSDSVSDCS DQIDDEDDVV  360
AKYRRRTGQG PQSKNLVAER KRRKKLNERL YNLRALVPKI SKMDKASILG DAIDFVKELQ  420
KQVKELQDEL EEHSDDENGK IVVTGNDGNK TSVQLPEFLS QNDKAQNSYH IGVLGSGSLL  480
KQHHQDTEGT NNDKTQQMEP QVEVAQIDGN EFFVKVFCEN KRGGFMRLME ALNALGLEVT  540
NANVTSYRGL VSNVFKVGKK DSELVQADDV RDSLLEITKY PCRGWSEMVK QPECSVSRMD  600
YQTHPHTHQH QHQHQHQIQH PFLDKAINSR LHLLDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	385	RRRTGQGPQSKNLVAERKRRKK
2	379	386	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-122	bHLH family protein