PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928544.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 189aa MW: 21079.7 Da PI: 8.7068

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928544.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.3	1.5e-44	28	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++Cv+apyfp+e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+ XP_022928544.1 28 PCAACKFLRRKCLPNCVFAPYFPSEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQRELD 122 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++++ XP_022928544.1 123 ATNAN 127 98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MLKQQLKQRK EMEKNYGKMS SSTYSNSPCA ACKFLRRKCL PNCVFAPYFP SEEPQKFANV 60 HKIFGASNVS KLLNEVQPHQ REDAVNSLAY EAEARMKDPV YGCVGAISIL QRQVIKLQRE 120 LDATNANLIR YACSELPAPS SSSSSQYARR SSSTSHIGSS STSSYGHYYS GLYFCGPCGD 180 DHDKGEEHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-68	LBD family protein