PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022928836.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 256aa    MW: 28332.6 Da    PI: 5.7348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022928836.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed llv +++q+G g+W++ +++ g+ R++k+c++rw +yl
   XP_022928836.1 15 KGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding55.61.2e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_022928836.1  68 RGNITPDEDDLIIKLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MGRTSSCCSK GGLHKGPWTA REDALLVSYI QQHGEGHWRA LPKKAGLLRC GKSCRLRWMN  60
YLRPDIKRGN ITPDEDDLII KLHTLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKLAIT  120
KDNAGEAKKE KVITTNSANG ETSDSRKPAR VSNGDNSSTG MASGLPFLSG NQGGGGETDR  180
LAVNGGGEIE KLKGREEMEE SGDLFGGCEV FYEGSWNCSE NGERIEEVED DSYQQLLSLQ  240
GEDYIQLESF IDYFLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-63MYB family protein