PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022928897.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 656aa MW: 72875.8 Da PI: 6.5832

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022928897.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.5	1.5e-24	90	191	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022928897.1 90 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 180 99**************************9543..445568********************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_022928897.1 181 NGELHVGVRRR 191 9999***97 PP
2	Auxin_resp	99.9	3.5e-33	216	294	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +WpnS WrsL XP_022928897.1 216 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISP-HWPNSSWRSL 294 689*************6..89******************************************99.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MGKIEVSMLV DLWALNILEA STNLELNKRI PLCNLSSKIL CRVIHIELLA DHESDEVYAQ 60 ITLMPESNQN EPNSLDPCPP EPARPVVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD 120 MTQATPTQDL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLSA GDSFVFLRGD 180 NGELHVGVRR RARQQSSMPS SVISSQSMHL GVLATASHAV TTQTRFVVYY KPRTCQFIIS 240 LNKYLEAVNN KFSVGMRFNM SFEGEDSPER RFSGTIIGAT DISPHWPNSS WRSLRVQWDE 300 QTSILRPDRV SPWDIEPLTS SAVTGLSQPI SKNKRPRQST PAHDGADLPK PALWDSGLAE 360 SHDGKQSSNA AESRKGENNE LCHHRETDAI SNRTCVSRTQ ADGTWLSSIQ SNSHKHPVND 420 MAQDYKTVPG CGWSFLSGPS TSHLVKLSDE QILDSTENGR KGETVASCRL FGIDLNHLAK 480 LPTEKASYQP SSVSSDTDGR SSTLSVAQSD PKSDNLEVSV ERKSEPLQAS LKETQSNQSS 540 SANTRSRTKV HMHGMAVGRA VDLAILEGYD QLIDELEKMF DVRGQLCARD KWEIVYTDDE 600 GDMMLVGDDP WEEFCNMVRR IFICSREQVK KMSSGSKQLT SIEVEGAAII PDSPAV

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MGKIEVSMLV DLWALNILEA STNLELNKRI PLCNLSSKIL CRVIHIELLA DHESDEVYAQ  60
ITLMPESNQN EPNSLDPCPP EPARPVVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD  120
MTQATPTQDL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLSA GDSFVFLRGD  180
NGELHVGVRR RARQQSSMPS SVISSQSMHL GVLATASHAV TTQTRFVVYY KPRTCQFIIS  240
LNKYLEAVNN KFSVGMRFNM SFEGEDSPER RFSGTIIGAT DISPHWPNSS WRSLRVQWDE  300
QTSILRPDRV SPWDIEPLTS SAVTGLSQPI SKNKRPRQST PAHDGADLPK PALWDSGLAE  360
SHDGKQSSNA AESRKGENNE LCHHRETDAI SNRTCVSRTQ ADGTWLSSIQ SNSHKHPVND  420
MAQDYKTVPG CGWSFLSGPS TSHLVKLSDE QILDSTENGR KGETVASCRL FGIDLNHLAK  480
LPTEKASYQP SSVSSDTDGR SSTLSVAQSD PKSDNLEVSV ERKSEPLQAS LKETQSNQSS  540
SANTRSRTKV HMHGMAVGRA VDLAILEGYD QLIDELEKMF DVRGQLCARD KWEIVYTDDE  600
GDMMLVGDDP WEEFCNMVRR IFICSREQVK KMSSGSKQLT SIEVEGAAII PDSPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein