PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022928948.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Trihelix
Protein Properties Length: 588aa    MW: 64394.4 Da    PI: 8.0576
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022928948.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.74.2e-3086170187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m++++r++ lk+plW+evs+k+ e g+ r++k+Ckek+en++k+yk++keg+++r  ++ +t+++f+qlea
  XP_022928948.1  86 RWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSRKLGEMGYARNAKKCKEKFENVQKYYKRTKEGRGGR--GDGKTYKFFTQLEA 170
                     8********************************************************************97..77778*******85 PP
2trihelix106.22.3e-33444529187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k evlaLi++r  +e+r+++   k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr  e+s+tcpyfd+l+a
  XP_022928948.1 444 RWPKPEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFDELDA 529
                     8*********************************************************************8.78999*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    
MEGVGGGSGS ELFGVKPSLT VDVVSDSQPV EAASPISSRP PASSSLNYEE LIRGGGQMAI  60
DDDALVGEDA GGGSGSGGGG GSAGNRWPRQ ETLALLKIRS DMDSAFRDAT LKGPLWDEVS  120
RKLGEMGYAR NAKKCKEKFE NVQKYYKRTK EGRGGRGDGK TYKFFTQLEA LHNAASQNVA  180
SSGFGISNPT PISAVKISQT PMGIFSPPPT IAAPMGVSFS SDTSSSSTEE EEEEEEEEEE  240
EEEMGFDVEG EPSSVAGSSR KRRRRGAVKG KSGGRRRRHK MMMGFFEGLM KEVVQKQEAM  300
QQRFLEAIER REEERMMREE TWKRQEMGRL REEQEKMAQE RTISGSRDAA IIAFLQKFTG  360
QTIELPSVNI SPSAPQQHYD LSVPVPAPTP VAMPLSPVPP PPPLKTQPPP NAMPFLDHPI  420
SISNQESSSH GGRGDGPSEP ISSRWPKPEV LALIKLRGGL ESRYQEMGPK GPLWEEISAG  480
MNRLGYKRSA KRCKEKWENI NKYFKKVKES NKKRREDSKT CPYFDELDAL YRKKIPTAGG  540
SDGGASFSDT AKLQQTHIQM PHTTSAEEQP PPPPPPPPSS PPPTKKTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260264RKRRR
2260278RKRRRRGAVKGKSGGRRRR
3261279RKRRRRGAVKGKSGGRRRR
4262280RKRRRRGAVKGKSGGRRRR
5263281RKRRRRGAVKGKSGGRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-59Trihelix family protein