PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022929594.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1070aa MW: 117575 Da PI: 6.3364

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022929594.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.8	4.3e-23	131	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022929594.1 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 222 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_022929594.1 223 QQLLLGIRRA 232 889**997 PP
2	Auxin_resp	118.5	5.6e-39	257	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW++S+Wr+L+ XP_022929594.1 257 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQ 340 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence
MKTPANGAAA MPNSSEGGLE KKIINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS 60 LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLA 120 LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV 180 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS 240 SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM 300 RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI 360 EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV 420 QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQIG LSNTQIPQSN NIQFNAQRLL 480 SQAQQLDQLP KLPSSMNSLG SVVQPSQQLD DMSQQTRSNL INQNAVSSQI QAQIMQQQQP 540 HTNGIVLQQN PQLQRSLPQN QPQTMNQSPL PEPMIHQLQM SDNQVPMQML QKLQQQQQQQ 600 SLLAQQSVVL QPGQLPEQLR QSVDASFSRS MSSNQMLDIP QSTPAAVPPS NVSPQQAAKS 660 NGTTNNRFSN QHLQPKLPQL QQPAPSTVLS DMSRPVGLPP TQTYNQLSAA TSSVITGAAA 720 AGQSGVTDDI PSCSTSPSTN NGPSLIQPVN NGRVHRSTGL VEDVAQSSAT IFSTNTLTAV 780 KPSLNISKNQ SHGIFAQQTF LSGVVSQTDF LDTSSSTTSA CLSQNEAQLQ QNNVMSFNSQ 840 PMLFRDSTQD LEVPTDLHNV PYGTNVDGPL VAQLNSDPLL NKGIGELGKD FSNNFSSGAM 900 LTTYDAQKDP QQEISSSIVS QSFGIPDMTF NSMDSAMNDN AFLNRNQWAP PPPFQRMRTY 960 TKVYKRGAVG RSIDITSYSG YDELKQDLAR RFGIEGQLED RQKIGWKLVY VDHENDVLLV 1020 GDDPWEDFVN CVRSIKILSP QEVQQMSLDG DFGNGVLLNQ ACSSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence

MKTPANGAAA MPNSSEGGLE KKIINPELWQ ACAGPLANLP PAGYHVVYFP QGHSEQVAAS  60
LKKDVDGQVP NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLLPVPSFD KDALLRSDLA  120
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LVAKDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD EKQQLLLGIR RANRQPTNLS  240
SSVLSTDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VSANQISLGM  300
RFRMMFETEE SGTRRYMGTI TGISDLDSVR WKGSQWRNLQ VGWDESTGGE RRNRVSIWEI  360
EPVIAPFFIC PPPFLRSKRP RQPGMPDDDS SDLDGICKRT MFGDDFCMKD PQGYPGLNLV  420
QWMNMQNPSL SNAMQPSYMH SFSGSMLPNL GGVDISRQIG LSNTQIPQSN NIQFNAQRLL  480
SQAQQLDQLP KLPSSMNSLG SVVQPSQQLD DMSQQTRSNL INQNAVSSQI QAQIMQQQQP  540
HTNGIVLQQN PQLQRSLPQN QPQTMNQSPL PEPMIHQLQM SDNQVPMQML QKLQQQQQQQ  600
SLLAQQSVVL QPGQLPEQLR QSVDASFSRS MSSNQMLDIP QSTPAAVPPS NVSPQQAAKS  660
NGTTNNRFSN QHLQPKLPQL QQPAPSTVLS DMSRPVGLPP TQTYNQLSAA TSSVITGAAA  720
AGQSGVTDDI PSCSTSPSTN NGPSLIQPVN NGRVHRSTGL VEDVAQSSAT IFSTNTLTAV  780
KPSLNISKNQ SHGIFAQQTF LSGVVSQTDF LDTSSSTTSA CLSQNEAQLQ QNNVMSFNSQ  840
PMLFRDSTQD LEVPTDLHNV PYGTNVDGPL VAQLNSDPLL NKGIGELGKD FSNNFSSGAM  900
LTTYDAQKDP QQEISSSIVS QSFGIPDMTF NSMDSAMNDN AFLNRNQWAP PPPFQRMRTY  960
TKVYKRGAVG RSIDITSYSG YDELKQDLAR RFGIEGQLED RQKIGWKLVY VDHENDVLLV  1020
GDDPWEDFVN CVRSIKILSP QEVQQMSLDG DFGNGVLLNQ ACSSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein