PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022930067.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family RAV
Protein Properties Length: 325aa    MW: 35990.6 Da    PI: 10.232
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022930067.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-124694155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  + +Aaka++ a+++++g
  XP_022930067.1 46 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNHEHQAAKAYDIAALRFRG 94
                    689***9788.8*********3.....5**********99*************98 PP
2B3955.1e-30176274194
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     g+ +++++ l +ed  g+ W+++++y+++s++yvltkGW++Fvk++ L++gD+v F ++   ++
  XP_022930067.1 176 FEKTVTPSDVGKLNRLVIPKQHAEKNfplgeGMGSAKGVLLNFEDMGGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKTLRAGDVVRFLRSTGPDK 270
                     99*****************************7777899*************************************************97765777 PP

                     ..EE CS
              B3  91 elvv 94 
                     +l++
  XP_022930067.1 271 KLYI 274
                     6666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MDTTSSLDDS AASDSTSVSP VTPLLFHSSS SPGVPHDAES RKLPSSRFKG VVPQPNGRWG  60
AQIYEKHQRV WLGTFNHEHQ AAKAYDIAAL RFRGRDAVTN FKPGAFSSVD AAFEADFLNS  120
HSKLEIVDML RKHTYNDELQ QSKRYGGGTT TTTTTAAAAA HSLQNAASES DREVLFEKTV  180
TPSDVGKLNR LVIPKQHAEK NFPLGEGMGS AKGVLLNFED MGGKLWRFRY SYWNSSQSYV  240
LTKGWSRFVK EKTLRAGDVV RFLRSTGPDK KLYIDGRAGG VKPVQVVKLF GVNILEVPVG  300
WCGKRDREGL SELERTKKQR IIKAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-118RAV family protein