PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022930499.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 301aa    MW: 34351.2 Da    PI: 8.672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022930499.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+ Ed +l+++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_022930499.1 16 RGRWTAVEDNKLKKYIEANGEGSWRLLPKNAGLLRCGKSCRLRWINYL 63
                     8*******************************99************97 PP
2Myb_DNA-binding49.97.4e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++Ede ++++++ +G++ W++Ia  ++ gRt++++k++w++
   XP_022930499.1  69 RGNITQQEDETILKLHTTFGNR-WSLIAGNLP-GRTDNEIKNYWNS 112
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MRMGRTPCCE KEGLRRGRWT AVEDNKLKKY IEANGEGSWR LLPKNAGLLR CGKSCRLRWI  60
NYLRADLKRG NITQQEDETI LKLHTTFGNR WSLIAGNLPG RTDNEIKNYW NSRLSKKIYS  120
TTAKKDAPES ADLSKRSNRG RPKKSAVLKK NKKQTTPLES SQSNSIAKVA LHDAGSNSRL  180
EGAEKEPIKS DEEEKKETSN TAMKDPKVEE KETWELGSNE LIDETIKGID ERENSVWSSN  240
IESEELYYSS SAWASSINSN FNSEWLNWNW EDDGGVLGQN FKEPSSWFYW ANTNGKGEEC  300
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-65MYB family protein