PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022930725.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 437aa MW: 48079.1 Da PI: 6.5892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022930725.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_022930725.1 28 KGPWTTAEDGILIEYVQKHGEGNWNAVQKHTGLARCGKSCRLRWANHL 75 79******************************************9986 PP
2	Myb_DNA-binding	50.6	4.6e-16	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++ XP_022930725.1 81 KGSFSQEEERLIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 124 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL 60 ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN 120 YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ 180 NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQV 240 NNNNSLSPLP LPVLPSQAAL QLSYGGYMEA EARSRNGKQT KEESSSGGQL KRTAEQGSTE 300 EQGANNLNVG SVVGSSGGDA AVPAGENHSD GFSSTHSSSR KRQRMEPLEE MESMVDDDLM 360 SLLSNFQTGM PVPELYPNNS NDDLGINTHN GLSLCETNGN RDEDEQRPNV GTTSAVASPV 420 LEWSLGSSCW NNMPSIC

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MVESNGEKRR SHGDHQEDGG AAEPALKKGP WTTAEDGILI EYVQKHGEGN WNAVQKHTGL  60
ARCGKSCRLR WANHLRPNLK KGSFSQEEER LIIELHAKLG NKWARMAAQL PGRTDNEIKN  120
YWNTRMKRRQ RAGLPLYPLD LQQEATAFQL RQHQNHRSST TTTTNVSVLR QKLEFDNNIQ  180
NSVSVFNFSS TMNNPQKNFS DGSLFYAAPT NQFKFFTENN GGGGFLPLSP VSPFPQIGQV  240
NNNNSLSPLP LPVLPSQAAL QLSYGGYMEA EARSRNGKQT KEESSSGGQL KRTAEQGSTE  300
EQGANNLNVG SVVGSSGGDA AVPAGENHSD GFSSTHSSSR KRQRMEPLEE MESMVDDDLM  360
SLLSNFQTGM PVPELYPNNS NDDLGINTHN GLSLCETNGN RDEDEQRPNV GTTSAVASPV  420
LEWSLGSSCW NNMPSIC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	12	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	2e-72	MYB family protein