PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022930883.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 244aa    MW: 27723.7 Da    PI: 8.0419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022930883.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
   XP_022930883.1 15 KGVWTLEEDQKLISYVNRYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 62
                     799*****************99************************97 PP
2Myb_DNA-binding47.54e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g +++ E+e++v+     Gg+ W+t a+ m+ gRt++++k++w+++l
   XP_022930883.1  68 KGGFSKKEEEIIVKMYSAIGGR-WSTMASLMP-GRTDNHIKNHWNTVL 113
                      5779******************.*********.************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MAKCCCCCDR TQVKKGVWTL EEDQKLISYV NRYGHWNWRQ LPKFAGLSRC GKSCRLRWMN  60
YLRPDIRKGG FSKKEEEIIV KMYSAIGGRW STMASLMPGR TDNHIKNHWN TVLKRRVLQK  120
NVSRTMANKP PPPPPSPPLP PATTSPIHEG FSGESLSSND KSTLIVDSTA LESALIQTIE  180
TPTAGNMDML PANDRPPLSS SGDFWTDPLW LDSDFDLPFD YQGLGEPIFS KFGLDEYIFQ  240
EELY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.13e-52MYB family protein