PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022930937.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 548aa MW: 60863.9 Da PI: 6.1301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022930937.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.2e-16	319	364	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_022930937.1 319 HNLSERRRRDRINEKMKALQELIPRC-----NKADKASMLDEAIEYLKSLQ 364 9**********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MNRCVPDFET DEDFSLHTSS VPLRSKTSSM SDGEVMELLW KNGQAVVHSQ NQKSRTKSPP 60 STTAEQITNR DIRPLNQEEE PQLFMQEDEM ISWLHYPLVD DSTLENSLCN ELLYPSQPQR 120 IEQNVGDSSQ VRTSHGMEFR PLTSMTTTIS RMTARPPIPP TRRTEPETKM NSFGMFSRHT 180 GRLESGPSNS KSEVRESPVV GSTSGDTTWL TPESTASDLQ RTAVADASSG DLACRVMSGG 240 GLTAISSGND GGLMNMTGAE TEPVIQRMTS FEDRKRKGKE TDDSDYKCRS ADVEFESTDA 300 KKQGRGSTST KRYRASDVHN LSERRRRDRI NEKMKALQEL IPRCNKADKA SMLDEAIEYL 360 KSLQFQVQFL WRWSMGCGMV PMMSPGVQQF MPPMPMGLGM GMETSVNLPM MPDRNMLAGS 420 TFPSPAGAAQ IGPTFTHPAF HMAHDPNTDP SRTQGTDLSE HVHSLSEMQN INHPRFSSSL 480 HGYQQFLGSQ QMQVPAAASQ QPSPQNQPAA LPRSLNQHTS QGLESIDNPE PGNPTMDPCL 540 NRRKHESS

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MNRCVPDFET DEDFSLHTSS VPLRSKTSSM SDGEVMELLW KNGQAVVHSQ NQKSRTKSPP  60
STTAEQITNR DIRPLNQEEE PQLFMQEDEM ISWLHYPLVD DSTLENSLCN ELLYPSQPQR  120
IEQNVGDSSQ VRTSHGMEFR PLTSMTTTIS RMTARPPIPP TRRTEPETKM NSFGMFSRHT  180
GRLESGPSNS KSEVRESPVV GSTSGDTTWL TPESTASDLQ RTAVADASSG DLACRVMSGG  240
GLTAISSGND GGLMNMTGAE TEPVIQRMTS FEDRKRKGKE TDDSDYKCRS ADVEFESTDA  300
KKQGRGSTST KRYRASDVHN LSERRRRDRI NEKMKALQEL IPRCNKADKA SMLDEAIEYL  360
KSLQFQVQFL WRWSMGCGMV PMMSPGVQQF MPPMPMGLGM GMETSVNLPM MPDRNMLAGS  420
TFPSPAGAAQ IGPTFTHPAF HMAHDPNTDP SRTQGTDLSE HVHSLSEMQN INHPRFSSSL  480
HGYQQFLGSQ QMQVPAAASQ QPSPQNQPAA LPRSLNQHTS QGLESIDNPE PGNPTMDPCL  540
NRRKHESS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	328	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	4e-63	bHLH family protein