PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022931185.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 194aa    MW: 21018.9 Da    PI: 8.2205
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022931185.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.6e-39211211100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq +++fa++hk+FGasnv+kll ++p  +r +a+ s++yeA+ar+rdPvyG+v+++++lqqq++ l+++l
  XP_022931185.1  21 PCGACKFLRRKCAPDCIFAPYFCSEQsAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQL 115
                     7***********************9978******************************************************************* PP

          DUF260  95 allkee 100
                      +++++
  XP_022931185.1 116 MQARAQ 121
                     999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MASSTTANSH ASASASASAS PCGACKFLRR KCAPDCIFAP YFCSEQSAAR FAAIHKVFGA  60
SNVSKLLLHV PVPHRCEAVV SIAYEAQARI RDPVYGCVAH LFALQQQVAY LQTQLMQARA  120
QLAQTHMEIQ WTGIPKFPSY QSQVTNSAVS PQTSLESAAD NDEAQFQQFP TKIPASCHAD  180
VGELQALALR MMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-67LBD family protein