PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022931469.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 694aa MW: 77641.6 Da PI: 7.53

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022931469.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.2	1.8e-24	124	223	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g++W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022931469.1 124 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGNEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 214 99**************************9643..445569********************************************..449 PP EE..EEEEE CS B3 89 efelvvkvf 97 ++el+v+v+ XP_022931469.1 215 NGELRVGVR 223 9999997 PP
2	Auxin_resp	102.3	6.3e-34	250	328	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+ t + F v+Y+Pra s+F+v+++k+ +a+++k+ vGmRfkm+fe+e+s+err+sGt+vgv d++p +WpnSkWrsL XP_022931469.1 250 ASHAVLTLTRFIVYYKPRA--SQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISP-HWPNSKWRSL 328 67999999********8..9******************************************999.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MANRGGGSFS SQGGGGDGLY TELWKASAGP LVEVPQVNDK VFYFPQGHME QLEASTNHEL 60 NQKHPLFKLS SKILCRVVDV RLLAEQETDE VYAQITLMPD SNQEEPTNPD PSPPECRKPK 120 VHSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAKDLH GNEWRFKHIF 180 RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRHLARQQT SMPSSVISSH 240 SMHLGVLATA SHAVLTLTRF IVYYKPRASQ FIVSLNKYIE AMNRKFLVGM RFKMRFEGEE 300 SPERRFSGTI VGVDDISPHW PNSKWRSLRI QWDELASIPR PDRVSPWEIE PFVAPTSPSI 360 PQSVSVKNKR LRPPLDIPDS DNSTVTTLRH PGSTQSHDDR TQLSGTAAEM KRFENHAMWN 420 YKQTDVSSIG NSISRTPKEG SWLASPNRSV SQHRLQNLTD DRNSNYVWST VFSGAPAAQS 480 TCPAPHPSNP KSSDQVNDLG EKGRKTEVAP SCRLFGIDII GHSKSPVPPE MAADQPISAP 540 NEITDAEQNS DQPKASKERK LGLLQVPPKE IQHKQSSSTN SRSRTKVQMQ GMAVGRAVDL 600 TMLEGYGELI DELEKMFDIK GELHPRDKWE IVFTDDEGDT MLMGDYPWQE FCNMVRRIYI 660 WSSQDVKMMS SVSKLTMSAM ECDGTVITSK SADS

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MANRGGGSFS SQGGGGDGLY TELWKASAGP LVEVPQVNDK VFYFPQGHME QLEASTNHEL  60
NQKHPLFKLS SKILCRVVDV RLLAEQETDE VYAQITLMPD SNQEEPTNPD PSPPECRKPK  120
VHSFCKVLTA SDTSTHGGFS VLRKHATECL PPLDMTQQTP TQELVAKDLH GNEWRFKHIF  180
RGQPRRHLLT TGWSTFVTSK RLVAGDSFVF LRGENGELRV GVRHLARQQT SMPSSVISSH  240
SMHLGVLATA SHAVLTLTRF IVYYKPRASQ FIVSLNKYIE AMNRKFLVGM RFKMRFEGEE  300
SPERRFSGTI VGVDDISPHW PNSKWRSLRI QWDELASIPR PDRVSPWEIE PFVAPTSPSI  360
PQSVSVKNKR LRPPLDIPDS DNSTVTTLRH PGSTQSHDDR TQLSGTAAEM KRFENHAMWN  420
YKQTDVSSIG NSISRTPKEG SWLASPNRSV SQHRLQNLTD DRNSNYVWST VFSGAPAAQS  480
TCPAPHPSNP KSSDQVNDLG EKGRKTEVAP SCRLFGIDII GHSKSPVPPE MAADQPISAP  540
NEITDAEQNS DQPKASKERK LGLLQVPPKE IQHKQSSSTN SRSRTKVQMQ GMAVGRAVDL  600
TMLEGYGELI DELEKMFDIK GELHPRDKWE IVFTDDEGDT MLMGDYPWQE FCNMVRRIYI  660
WSSQDVKMMS SVSKLTMSAM ECDGTVITSK SADS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein