PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022931807.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24768.8 Da    PI: 8.6066
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022931807.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.3e-151051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i n+  r+ tf kR++g lKK  EL +LC+++++ iifs+ 
  XP_022931807.1 10 FITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPF 51
                    799*************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTRKKVKLTF ITNDAARKAT FKKRKKGFLK KLTELTTLCG IDACAIIFSP FNSYPDLWPS  60
LVGVQRVISH FKALPEMEQC KKMVNQETFL RHRIAKAADQ LKKLQRENRE KEIAHVMFQS  120
LVAGGAPRPS LNVIDLNDLG WLVDQKMADI CKRIELLRSA VAVEENQPPC VATVEPSWFI  180
EMVNQECDDQ MRFNIGDDVI QLPTFGEDGW PNNAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTFITNDAARKATFKKRK
21732RKATFKKRKKGFLKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-55M-type_MADS family protein