PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022931856.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 377aa MW: 40547.2 Da PI: 4.9155

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022931856.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.8e-16	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + XP_022931856.1 57 KGPWSPEEDAILSRLVGKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	57	4.5e-18	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ XP_022931856.1 109 RKPFTDEEDRIIVAAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEAASAAEVD ATVAEGGGVD ACDAVVSVAD CASGDDAVPM VGEGESTGGR GGKDRVKGPW 60 SPEEDAILSR LVGKFGARNW SLIARGIAGR SGKSCRLRWC NQLDPSVKRK PFTDEEDRII 120 VAAHAVHGNK WAAIARLLPG RTDNAIKNHW NSTLRRRCTE LERIKSGNTV DDASLEKTKG 180 SSEETLSCGD VNSFKSLEGK DTCSREHIDD QFEDKVPMAI EGQFSHEVKE QEQPTLFRPV 240 ARVSAFSVYN PSDGQESLRA FLRPVPMQGP LIQASTPDVE ASKLLEGVYC DRSVPHQCGH 300 GCCESYNQGS TMDSLLGPEF VDFSEPPPSF TSFELAAIAT DISNLAWLKS GLENGSVRAM 360 GDSAGRLNGS QMQVGRL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEAASAAEVD ATVAEGGGVD ACDAVVSVAD CASGDDAVPM VGEGESTGGR GGKDRVKGPW  60
SPEEDAILSR LVGKFGARNW SLIARGIAGR SGKSCRLRWC NQLDPSVKRK PFTDEEDRII  120
VAAHAVHGNK WAAIARLLPG RTDNAIKNHW NSTLRRRCTE LERIKSGNTV DDASLEKTKG  180
SSEETLSCGD VNSFKSLEGK DTCSREHIDD QFEDKVPMAI EGQFSHEVKE QEQPTLFRPV  240
ARVSAFSVYN PSDGQESLRA FLRPVPMQGP LIQASTPDVE ASKLLEGVYC DRSVPHQCGH  300
GCCESYNQGS TMDSLLGPEF VDFSEPPPSF TSFELAAIAT DISNLAWLKS GLENGSVRAM  360
GDSAGRLNGS QMQVGRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-103	MYB family protein