PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022932360.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 544aa    MW: 60388.2 Da    PI: 5.7242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022932360.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.31.2e-1301755432373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L +cA+a+ ++++   ++l+++l+ ++s +g+p+qRl ay++eAL ar a+s+++++kal+++e      +e l+++++++e++P++kf++l
  XP_022932360.1 175 KEMLCACARAIGENNMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALIARTASSGNSICKALRCKEPI---GTEMLSYMHILYEICPYFKFGYL 266
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ge+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++ iTg+++++s   +   le +g+rL+ +Ae+l vpfef+  +a + +++
  XP_022932360.1 267 SANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSASAfaRGGGLEIVGKRLSLLAESLMVPFEFRG-IAGSADEI 360
                     *****************************************************88889999*************************.699***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+pgEa+aV++ l lh+++desv ++++rd++L+lvkslsPkvv+vve+e++ n+++F  rfl++l+yy+a+f+s++++lpr+++eri+
  XP_022932360.1 361 QREDLKVQPGEAIAVSFTLVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFYSRFLQTLKYYTAIFESIDVTLPRDHKERIN 455
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivn+vacegaer+erhe l+kWr+r+ +aGFkp pls ++++++++ll+++++  y++ee++g+l+lgW +++Lv+ SaW
  XP_022932360.1 456 VEQHCLARDIVNIVACEGAERVERHELLGKWRSRFLMAGFKPHPLSPFVNATIEALLKNYSD-KYTLEERDGALYLGWLNQNLVTSSAW 543
                     *************************************************************5.5************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQESSRKKLP NQSHRFYEQP PQEPGSCYWP PMNHGGGLYS DDVFEQNHLP SEAFKQYCNL  60
ESSSGTSGYP PQNSSSTASF TSNGSPSSHQ ECHSYSLDPY YSPDNNCGSP VSRSCLTDDA  120
ADDLRHKIRE LETAMLGPDT DGFDIYSVAN PVDPVLPVQA GWKDVAEIMS RKDLKEMLCA  180
CARAIGENNM LTGEWLVSEL RGMVSVSGEP IQRLGAYLLE ALIARTASSG NSICKALRCK  240
EPIGTEMLSY MHILYEICPY FKFGYLSANG AIAEAIKGEN RVHIIDFQIA QGNQWITLMQ  300
ALANRPGGPP KVTITGIDDS ASAFARGGGL EIVGKRLSLL AESLMVPFEF RGIAGSADEI  360
QREDLKVQPG EAIAVSFTLV LHHMPDESVG SQNHRDRILR LVKSLSPKVV TVVEHESNNN  420
TAPFYSRFLQ TLKYYTAIFE SIDVTLPRDH KERINVEQHC LARDIVNIVA CEGAERVERH  480
ELLGKWRSRF LMAGFKPHPL SPFVNATIEA LLKNYSDKYT LEERDGALYL GWLNQNLVTS  540
SAWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein