PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022932488.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Whirly
Protein Properties Length: 239aa    MW: 26667.6 Da    PI: 10.1446
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022932488.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly176.17.3e-55631982137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+ka +++ + +ptf++l+sg+l+++r+G++ll++ +a++erkydW kkq f+l +tev++l++l++++sceffhdp++ +s +G+vrk+l++
  XP_022932488.1  63 VYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLNPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLSI 157
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG G+f++l+v n+ + ++e +svP + +ef+v++++
  XP_022932488.1 158 KAHADGNGYFISLNVVNNTQSTKEFLSVPFTAGEFSVMKTA 198
                     ******************9********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MLKLQRWFSR NQLFEQVVCK KAGHVDHAFG SHPFSSGVGI PGQKFTNTVP KNENDRVYAA  60
YNVYKGKAGV SMFPCLPTFT KLESGSLVID RRGSILLTFF PAIGERKYDW TKKQFFSLNP  120
TEVGTLISLG PRDSCEFFHD PGMLSSTAGQ VRKSLSIKAH ADGNGYFISL NVVNNTQSTK  180
EFLSVPFTAG EFSVMKTACS FALPHILGWD RLTKPSLGME KGFQPNKVNR EGLSLEWKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-78Whirly family protein