PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022933067.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 681aa    MW: 75410.5 Da    PI: 6.3339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022933067.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.6e-22130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_022933067.1 130 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 220
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022933067.1 221 NGELRVGVRR 230
                     999*****97 PP
2Auxin_resp102.17.2e-34256338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d  +  W nS WrsLk
  XP_022933067.1 256 ASHAVATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLK 338
                     789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    
MSFSAASNLP SGGPHSVSGS SSDALYRELW HACAGPLVTL PRQDERVYYF PQGHMEQLEA  60
SMNQGLEQQM PSFNLASKIL CKVVNVVLRA EPDTDEVYAQ ITLLPESNQS EVTTPDPALP  120
EPTRCNVHSF CKTLTASDTS THGGFSVLRR HADDCLPPLD MSQQPPWQEL VATDLHGNQW  180
HFRHIFRGQP RRHLLTTGWS VFVSSKKLVA GDAFIFLRGE NGELRVGVRR LMRQLNNMPS  240
SVISSHSMHL GVLATASHAV ATGTLFSVFY KPRTSRSTFL VSLNKYLEAQ NHKLSVGMRF  300
KMRFEGEEVP ERSFSGTIVG LGDNASPGWA NSDWRSLKVQ WDEPSSILRP DRVSAWELEP  360
LVASNPLSSQ PTQRNKRPRP TVLPSPTADA AVLGGWKPTV ESSAFSFTEP PQRGRDVYSS  420
PKFSTAASNS LGFNGNSSLG AVSSNNYWSN TNRVENIIDT SSHGANREPI EKKQNTRNGC  480
RLFGIQLLGN SDVGEASPDT TPKMVSEDRS VPPVDTEFDQ NSERSNVHRL NIPSVSCDAD  540
KSCLISPLES QSRQIRSCTK VHMQGIAVGR AVDLTRFNQY DDLLGKLEEM FDIEGELCGS  600
VKKWQVVYTD DEDDMMMVGD DPWNEFVSMV RKIFIYTTEE VKRLSPKIKL PLGGETKLSK  660
PDSDTTANHT EDQSSIVGSD C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376380KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0ARF family protein