PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022933178.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 731aa    MW: 81255.2 Da    PI: 6.1872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022933178.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1966121156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  XP_022933178.1  66 RKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQLK 121
                     789999**********************************************9877 PP
2START183.11.6e-572514701206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el ++a a+ep+Wv      e++n+de+l++ +++ +      s ea+r++ +v  ++ +l  +l+d++ qW++ +     +a tle
  XP_022933178.1 251 ELAVSAMEELCRMAHAGEPLWVPGEnsmEMLNEDEYLRTYSTGIGprilgLSFEASRETSIVAFNHLKLIDILMDVN-QWSNIFCgivsRALTLE 344
                     57899*****************888888************99999********************************.******99999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      gal++m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+d  ++ p+     R +++pSg+li++++ng+sk+ wvehv+
  XP_022933178.1 345 VLSTGvggsynGALHVMTAEFQVPSPLVPtRENYFVRYCKQQTDRSWAVVDVSLDYLRPTPT----SRTRRRPSGCLIQELPNGYSKIMWVEHVE 435
                     ***********************************************************995....78889************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l++++v  gla+gak+wvatl+rqc++
  XP_022933178.1 436 VDDRAVHNLYKRVVTCGLAFGAKRWVATLDRQCQR 470
                     *********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    
MLGGHDYEEH HHHEEDVVLL EMTQKTFETE LEKFGEDDQL ESSSRSVKDA AMGEDDPFLH  60
NHTNKRKRYH RHTQLQIQEM EAFFKECPHP DDKQRKELSR ELGLDPLQVK FWFQNKRTQL  120
KAQHERHENA ILKAQNEKLR AENMRYKEAL SNTSCPNCGG PAALGEMSFD DQHLRIDNAQ  180
LRDEIERLNS VASKFAGKPW ASHSRIPPCA LDLGVGRALQ PPQAEFLGEI YGVGDMLKSV  240
TTEIDKPVIV ELAVSAMEEL CRMAHAGEPL WVPGENSMEM LNEDEYLRTY STGIGPRILG  300
LSFEASRETS IVAFNHLKLI DILMDVNQWS NIFCGIVSRA LTLEVLSTGV GGSYNGALHV  360
MTAEFQVPSP LVPTRENYFV RYCKQQTDRS WAVVDVSLDY LRPTPTSRTR RRPSGCLIQE  420
LPNGYSKIMW VEHVEVDDRA VHNLYKRVVT CGLAFGAKRW VATLDRQCQR LTNSSAANIP  480
AVDICVVTGQ EGRRSVMKLA ERMVRSFCSG VGAASAHNWT TLSTIDSDHV RVMARKSLDD  540
PGRPPGIVLN AATSFWIPIP PNRVFHFLRD QNTRSQWDVL SNGGLVQEMA RIGNDRNPGN  600
CVSLLRVNST NSSQSNMLIL QESCSDISGC YITYAPVDTV AMNMVLSGGD PDYVALLPSG  660
FAILPDGPSG PDAPAGILEF GSGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTVE  720
RIRAAVMCEH P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein