PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933260.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 369aa MW: 41054.6 Da PI: 8.1005

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933260.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	6.1e-42	89	165	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_022933260.1 89 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 165 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDWNLKAPYW DFTQLEHDAS KNINTIGASS NFVEHRTTTS RDFSVDLKLG QVSHLGTKYT 60 VNKLKMAPSP SEPSKRARGC GNGAQPLSCL VDGCVSDLSN YRDYHRRHKV CELHSKTPQV 120 TIGGLKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPESLSH YQGSPFIPFS 180 TSYVYPSSTA VANHSWCGIS NTKTDASLHT QQHSTHFPDK HHMYLGSSSN DSIHKIPKQV 240 TFLQSDNPET LVCQPLDFSE NAGGRGKLLF DRFSNPGHES DCALSLLSSL QTRSSGVGLS 300 QPDQDSNLIS FMQPLDVSLG HHNSLDPLNS VLNGSVSNAD ISCSRMFQSA SDDGGREAPP 360 PPSLPFHWQ

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDWNLKAPYW DFTQLEHDAS KNINTIGASS NFVEHRTTTS RDFSVDLKLG QVSHLGTKYT  60
VNKLKMAPSP SEPSKRARGC GNGAQPLSCL VDGCVSDLSN YRDYHRRHKV CELHSKTPQV  120
TIGGLKQRFC QQCSRFHSLE EFDEGKRSCR KRLDGHNRRR RKPQPESLSH YQGSPFIPFS  180
TSYVYPSSTA VANHSWCGIS NTKTDASLHT QQHSTHFPDK HHMYLGSSSN DSIHKIPKQV  240
TFLQSDNPET LVCQPLDFSE NAGGRGKLLF DRFSNPGHES DCALSLLSSL QTRSSGVGLS  300
QPDQDSNLIS FMQPLDVSLG HHNSLDPLNS VLNGSVSNAD ISCSRMFQSA SDDGGREAPP  360
PPSLPFHWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	163	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-54	SBP family protein