PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022933554.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 250aa    MW: 28372 Da    PI: 9.431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022933554.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q G+g+W+++++  g+ R+ k+c++rw +yl
   XP_022933554.1 14 KGPWTPEEDIILVSYIHQNGPGNWRSVPHNTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.34.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E++ ++++ ++lG++ W++Ia++++ +Rt++++k++w+++l
   XP_022933554.1  67 RGQFSDHEEKMIIHLQALLGNR-WAAIASYLP-RRTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRPPCCQTI SVKKGPWTPE EDIILVSYIH QNGPGNWRSV PHNTGLSRCS KSCRLRWTNY  60
LRPGIKRGQF SDHEEKMIIH LQALLGNRWA AIASYLPRRT DNDIKNYWNT HLKKKLKVYE  120
NGLSKGQWER RVQTDIETAK QALKEALSLT KQTHTSESNT PSCSSYALSA ENIARLLKNW  180
TKNSTRSNSE SRSTQNCVSV EESSKLETGV ESVGGVPLTL LETWLFDDVA PQNHQHLINF  240
SLQDGHQGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-92MYB family protein