PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933588.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 303aa MW: 32153.2 Da PI: 9.4798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933588.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_022933588.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP
2	zf-CCCH	30.6	5.8e-10	270	295	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ GtC + +rC+FaHg+ XP_022933588.1 270 FKTKLCANFAK-GTCTFRERCHFAHGE 295 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MDPDGVRKRE RAETALNGNG AFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMNSPAIS PGIRNPVAPP SFPDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWDL GRPNPPPEHG GMGGGPLGQQ PRMGGGWNVP PPQPNHGPAA SFGASATAKI 180 SVDASLAGPI IGKNGVNSKN ICRMTGARLS IKDHESDSSL KNIELEGTFD QINLASSMVR 240 ELIANVGAAS ANNAMRQQQQ QHSQHSANNF KTKLCANFAK GTCTFRERCH FAHGESELRK 300 PGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-52	C3H family protein