PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022933660.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 523aa MW: 60562 Da PI: 7.1347

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022933660.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40	1e-12	98	159	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkik 65 +W+++e laL+++r+++++ + ++ We+vs++ e gf+r+p +Ckek+e+ ++++ i+ XP_022933660.1 98 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRYRklGEVGFTRTPDKCKEKFEDESRYFNHIN 159 7****************99998.....9*986669********************9876 PP
2	trihelix	90.4	2e-28	399	500	1	86
trihelix 1 rWtkqevlaLiearr........emeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW+++evlaL+++r + + lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kk XP_022933660.1 399 RWPRDEVLALVNVRCslydnnsnN--------NnnnsdqdksggtdqatlLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKK 485 8***********9554443330........223455666777777888***************************************** PP trihelix 71 rtsessstcpyfdqle 86 r s +s+tcpyf+ql XP_022933660.1 486 R-SIDSRTCPYFHQLS 500 8.78889*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV 60 HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE 120 STWEHVSRYR KLGEVGFTRT PDKCKEKFED ESRYFNHINY NKTCMFLTHE LNYDQETEDG 180 GAVVVVPEEA KHERGNDNND NNDDNDEQQQ SSSKSKRKRK TRTTRQREFE VLKGYCEDIV 240 KNMMIQQEEI HSKLLHEMLK REEEKIAKEE CWKKQQMERF HKELQMMAQE QAIASDRQAT 300 MIEILNQISI SNPFSSSKSK KDLQNLLHSL NHHHNNNNNL PNSPSSSSLI QTQNPKNPSS 360 STQILPPQDP NSNPPPFSIQ KLPQNPKTRE KEVDDLGKRW PRDEVLALVN VRCSLYDNNS 420 NNNNNNSDQD KSGGTDQATL LKAPLWERIS QGMLQLGYKR SAKRCKEKWE NINKYFRKTK 480 DVNKKRSIDS RTCPYFHQLS TLYNQGGNRS MENLPDNVVG KPL

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MFEGSVSEQL HQFLAPRTTT TTTTTTTPPN SNSLPFLLHS PNFNFHPFDS YNPSSNHHLV  60
HQSSENDNET TTTTTTTMAN LSVAMDLEDH NHHNHHNQWS NDELLALLRI RSNIDNCFPE  120
STWEHVSRYR KLGEVGFTRT PDKCKEKFED ESRYFNHINY NKTCMFLTHE LNYDQETEDG  180
GAVVVVPEEA KHERGNDNND NNDDNDEQQQ SSSKSKRKRK TRTTRQREFE VLKGYCEDIV  240
KNMMIQQEEI HSKLLHEMLK REEEKIAKEE CWKKQQMERF HKELQMMAQE QAIASDRQAT  300
MIEILNQISI SNPFSSSKSK KDLQNLLHSL NHHHNNNNNL PNSPSSSSLI QTQNPKNPSS  360
STQILPPQDP NSNPPPFSIQ KLPQNPKTRE KEVDDLGKRW PRDEVLALVN VRCSLYDNNS  420
NNNNNNSDQD KSGGTDQATL LKAPLWERIS QGMLQLGYKR SAKRCKEKWE NINKYFRKTK  480
DVNKKRSIDS RTCPYFHQLS TLYNQGGNRS MENLPDNVVG KPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	3e-72	Trihelix family protein